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@Bitbol-Lab

Bitbol-Lab

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  1. ProtMamba-ssm ProtMamba-ssm Public

    ProtMamba: a homology-aware but alignment-free protein state space model

    Jupyter Notebook 62 7

  2. Iterative_masking Iterative_masking Public

    Iterative masking algorithm on MSA Transformer to generate synthetic sequences

    Jupyter Notebook 26 7

  3. DiffPALM DiffPALM Public

    Differentiable Pairing using Alignment-based Language Models

    Jupyter Notebook 19 3

  4. Phylogeny-MSA-Transformer Phylogeny-MSA-Transformer Public

    Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)

    Jupyter Notebook 17 1

  5. rag-esm rag-esm Public

    Python 11 1

  6. DiffPaSS DiffPaSS Public

    Differentiable Pairing using Soft Scores

    Jupyter Notebook 6 1

Repositories

Showing 10 of 22 repositories
  • rag-esm Public
    Bitbol-Lab/rag-esm’s past year of commit activity
    Python 11 MIT 1 0 0 Updated Apr 10, 2025
  • ProtMamba-ssm Public

    ProtMamba: a homology-aware but alignment-free protein state space model

    Bitbol-Lab/ProtMamba-ssm’s past year of commit activity
    Jupyter Notebook 62 Apache-2.0 7 1 0 Updated Mar 26, 2025
  • partial_sampling_spatially_structured_population Public

    Repository for my lab immersion on spatially structured populations with partial updates.

    Bitbol-Lab/partial_sampling_spatially_structured_population’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 13, 2025
  • Fine-tuning-MSA-Transformer Public Forked from masazelic/Fine-tuning-MSA-Transformer
    Bitbol-Lab/Fine-tuning-MSA-Transformer’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Feb 4, 2025
  • alphafold Public Forked from google-deepmind/alphafold

    Open source code for AlphaFold.

    Bitbol-Lab/alphafold’s past year of commit activity
    Python 0 Apache-2.0 2,403 0 0 Updated Jan 27, 2025
  • Phylogeny-MSA-Transformer Public

    Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)

    Bitbol-Lab/Phylogeny-MSA-Transformer’s past year of commit activity
    Jupyter Notebook 17 MIT 1 0 0 Updated Jan 17, 2025
  • Phylogeny-ESM2 Public

    Monte-Carlo generation of synthetic multiple sequence alignments along phylogenetic trees using a protein language model

    Bitbol-Lab/Phylogeny-ESM2’s past year of commit activity
    Python 2 0 0 0 Updated Jan 15, 2025
  • fitness-landscapes Public
    Bitbol-Lab/fitness-landscapes’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 14, 2024
  • DrugRes_StructPop Public

    Repository for "Spatial structure facilitates evolutionary rescue by cost-free drug resistance" (2024) by C. Fruet, E. L. Müller, C. Loverdo, and A.-F. Bitbol.

    Bitbol-Lab/DrugRes_StructPop’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 2, 2024
  • ProtMamba-frozen-nips Public
    Bitbol-Lab/ProtMamba-frozen-nips’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated May 22, 2024
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