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<a href="assembly__base_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">/*</span></div><div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment"> * MAST: Multidisciplinary-design Adaptation and Sensitivity Toolkit</span></div><div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment"> * Copyright (C) 2013-2019 Manav Bhatia</span></div><div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment"> *</span></div><div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment"> * This library is free software; you can redistribute it and/or</span></div><div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment"> * modify it under the terms of the GNU Lesser General Public</span></div><div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment"> * License as published by the Free Software Foundation; either</span></div><div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment"> * version 2.1 of the License, or (at your option) any later version.</span></div><div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment"> *</span></div><div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment"> * This library is distributed in the hope that it will be useful,</span></div><div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment"> * but WITHOUT ANY WARRANTY; without even the implied warranty of</span></div><div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment"> * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU</span></div><div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment"> * Lesser General Public License for more details.</span></div><div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment"> *</span></div><div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment"> * You should have received a copy of the GNU Lesser General Public</span></div><div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment"> * License along with this library; if not, write to the Free Software</span></div><div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment"> * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA</span></div><div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment"> */</span></div><div class="line"><a name="l00019"></a><span class="lineno"> 19</span> </div><div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="preprocessor">#ifndef __mast__system_assembly_base_h__</span></div><div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="preprocessor">#define __mast__system_assembly_base_h__</span></div><div class="line"><a name="l00022"></a><span class="lineno"> 22</span> </div><div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// C++ includes</span></div><div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="preprocessor">#include <map></span></div><div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="preprocessor">#include <memory></span></div><div class="line"><a name="l00026"></a><span class="lineno"> 26</span> </div><div class="line"><a name="l00027"></a><span class="lineno"> 27</span> </div><div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// MAST includes</span></div><div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="preprocessor">#include "<a class="code" href="mast__data__types_8h.html">base/mast_data_types.h</a>"</span></div><div class="line"><a name="l00030"></a><span class="lineno"> 30</span> </div><div class="line"><a name="l00031"></a><span class="lineno"> 31</span> </div><div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// libMesh includes</span></div><div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="preprocessor">#include "libmesh/system.h"</span></div><div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="preprocessor">#include "libmesh/nonlinear_implicit_system.h"</span></div><div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#include "libmesh/sparse_matrix.h"</span></div><div class="line"><a name="l00036"></a><span class="lineno"> 36</span> </div><div class="line"><a name="l00037"></a><span class="lineno"> 37</span> </div><div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="keyword">namespace </span><a class="code" href="namespace_m_a_s_t.html">MAST</a> {</div><div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  </div><div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  <span class="comment">// Forward declerations</span></div><div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  <span class="keyword">class </span>PhysicsDisciplineBase;</div><div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="keyword">class </span>SystemInitialization;</div><div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="keyword">class </span>ElementBase;</div><div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <span class="keyword">class </span>MeshFieldFunction;</div><div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  <span class="keyword">class </span>NonlinearSystem;</div><div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="keyword">class </span>FEBase;</div><div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  <span class="keyword">class </span>AssemblyElemOperations;</div><div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <span class="keyword">class </span>OutputAssemblyElemOperations;</div><div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  <span class="keyword">class </span>FunctionBase;</div><div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  </div><div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base.html"> 51</a></span>  <span class="keyword">class </span><a class="code" href="class_m_a_s_t_1_1_assembly_base.html">AssemblyBase</a>:</div><div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keyword">public</span> libMesh::NonlinearImplicitSystem::ComputeResidualandJacobian {</div><div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  <span class="keyword">public</span>:</div><div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  </div><div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a9a4d4c88402ce1d98278c7b1aac25d1b">AssemblyBase</a>();</div><div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  </div><div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keyword">virtual</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a2034db25d6074eef21899ab93c66a833">~AssemblyBase</a>();</div><div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  </div><div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  </div><div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html"> 67</a></span>  <span class="keyword">class </span><a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html">SolverMonitor</a> {</div><div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  <span class="keyword">public</span>:</div><div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html#ae2eb17875751498a7db02cf5c486ee8b"> 69</a></span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html#ae2eb17875751498a7db02cf5c486ee8b">SolverMonitor</a>(){}</div><div class="line"><a name="l00070"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html#a9a81cbb4bd447b7b8bff92a69278cef9"> 70</a></span>  <span class="keyword">virtual</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html#a9a81cbb4bd447b7b8bff92a69278cef9">~SolverMonitor</a>(){}</div><div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html#a870f074f8f9784e41fa9fa4b4c490652">init</a>(<a class="code" href="class_m_a_s_t_1_1_assembly_base.html">MAST::AssemblyBase</a>& assembly) = 0;</div><div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html#abc8a26ac4d0f61ffd724604ecea8429d">clear</a>() = 0;</div><div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  };</div><div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  </div><div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html"> 86</a></span>  <span class="keyword">class </span><a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html">ElemParameterDependence</a> {</div><div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  <span class="keyword">public</span>:</div><div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html#aa1ad24c1c7463b9a48c1885309f01157"> 88</a></span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html#aa1ad24c1c7463b9a48c1885309f01157">ElemParameterDependence</a>(<span class="keywordtype">bool</span> o_flag): override_flag(o_flag) {}</div><div class="line"><a name="l00089"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html#a57228147ce0fb41df44e9571cd84f09c"> 89</a></span>  <span class="keyword">virtual</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html#a57228147ce0fb41df44e9571cd84f09c">~ElemParameterDependence</a>() {}</div><div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  <span class="keyword">virtual</span> <span class="keywordtype">bool</span> if_elem_depends_on_parameter(<span class="keyword">const</span> libMesh::Elem& e,</div><div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  <span class="keyword">const</span> <a class="code" href="class_m_a_s_t_1_1_function_base.html">MAST::FunctionBase</a>& p) <span class="keyword">const</span> = 0;</div><div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html#af2dbdf12da9e6e2e885106de152fc953"> 97</a></span>  <span class="keywordtype">bool</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html#af2dbdf12da9e6e2e885106de152fc953">override_flag</a>;</div><div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  };</div><div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  </div><div class="line"><a name="l00103"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base.html#a13f08f11353ef98dda92f3ccacc92902"> 103</a></span>  <span class="keywordtype">bool</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a13f08f11353ef98dda92f3ccacc92902">close_matrix</a>;</div><div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  </div><div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  <span class="keyword">const</span> <a class="code" href="class_m_a_s_t_1_1_physics_discipline_base.html">MAST::PhysicsDisciplineBase</a>& <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a447c284ed86a61935a8498a5fee23462">discipline</a>() <span class="keyword">const</span>;</div><div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  </div><div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <a class="code" href="class_m_a_s_t_1_1_physics_discipline_base.html">MAST::PhysicsDisciplineBase</a>& <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a447c284ed86a61935a8498a5fee23462">discipline</a>();</div><div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  </div><div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  </div><div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_elem_operations.html">MAST::AssemblyElemOperations</a>& <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a0b4114f497996001f1e54f452a926786">get_elem_ops</a>();</div><div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  </div><div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  </div><div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span></div><div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a0644e12cd53adc64d9b7e027becc08b5">set_discipline_and_system</a>(<a class="code" href="class_m_a_s_t_1_1_physics_discipline_base.html">MAST::PhysicsDisciplineBase</a>& <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a447c284ed86a61935a8498a5fee23462">discipline</a>,</div><div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <a class="code" href="class_m_a_s_t_1_1_system_initialization.html">MAST::SystemInitialization</a>& <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#abdff8292b4929a3aa7276c639a8d05e3">system</a>);</div><div class="line"><a name="l00130"></a><span class="lineno"> 130</span> </div><div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  <span class="keywordtype">void</span></div><div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a7a236e900be0ba6dbfe630ebb51e3152">attach_elem_parameter_dependence_object</a>(<a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html">MAST::AssemblyBase::ElemParameterDependence</a>& dep);</div><div class="line"><a name="l00139"></a><span class="lineno"> 139</span> </div><div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  </div><div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  <span class="keywordtype">void</span></div><div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#af8281c5eece58746b64293f8ccea49f3">clear_elem_parameter_dependence_object</a>();</div><div class="line"><a name="l00143"></a><span class="lineno"> 143</span> </div><div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  </div><div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span></div><div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a9f7f65a2be3dc8f6edb9000020aa8ccf">clear_discipline_and_system</a>();</div><div class="line"><a name="l00150"></a><span class="lineno"> 150</span> </div><div class="line"><a name="l00151"></a><span class="lineno"> 151</span> </div><div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span></div><div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#adcc03f1662807d86d866ee3a4e2b60df">set_elem_operation_object</a>(<a class="code" href="class_m_a_s_t_1_1_assembly_elem_operations.html">MAST::AssemblyElemOperations</a>& elem_ops);</div><div class="line"><a name="l00158"></a><span class="lineno"> 158</span> </div><div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  </div><div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span></div><div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#ad607ffca1c704155f56f503cbfe6350a">clear_elem_operation_object</a>();</div><div class="line"><a name="l00166"></a><span class="lineno"> 166</span> </div><div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  </div><div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <span class="keyword">const</span> <a class="code" href="class_m_a_s_t_1_1_nonlinear_system.html">MAST::NonlinearSystem</a>& <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#abdff8292b4929a3aa7276c639a8d05e3">system</a>() <span class="keyword">const</span>;</div><div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  </div><div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <a class="code" href="class_m_a_s_t_1_1_nonlinear_system.html">MAST::NonlinearSystem</a>& <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#abdff8292b4929a3aa7276c639a8d05e3">system</a>();</div><div class="line"><a name="l00179"></a><span class="lineno"> 179</span> </div><div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <a class="code" href="class_m_a_s_t_1_1_system_initialization.html">MAST::SystemInitialization</a>& <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a12fa42f74de999be67da555082a32c5d">system_init</a>();</div><div class="line"><a name="l00184"></a><span class="lineno"> 184</span> </div><div class="line"><a name="l00185"></a><span class="lineno"> 185</span> </div><div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="keywordtype">void</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#aff8ece1161fffa7fc8afc31a8f261455">set_solver_monitor</a>(<a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html">MAST::AssemblyBase::SolverMonitor</a>& monitor);</div><div class="line"><a name="l00191"></a><span class="lineno"> 191</span> </div><div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html">MAST::AssemblyBase::SolverMonitor</a>* <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a652097c4673958f03ff6cca8cf037847">get_solver_monitor</a>();</div><div class="line"><a name="l00197"></a><span class="lineno"> 197</span> </div><div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  <span class="keywordtype">void</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a5eb48a95d52bb9454c9efac225c73ba0">clear_solver_monitor</a>();</div><div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  </div><div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="keywordtype">void</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#abb38e8d6b62b5332974755ec4587c1e8">attach_solution_function</a>(<a class="code" href="class_m_a_s_t_1_1_mesh_field_function.html">MAST::MeshFieldFunction</a>& f);</div><div class="line"><a name="l00208"></a><span class="lineno"> 208</span> </div><div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  </div><div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <span class="keywordtype">void</span> <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a97d3049ca6034e65f34cacb9cf5dd75b">detach_solution_function</a>();</div><div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  </div><div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span></div><div class="line"><a name="l00220"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base.html#ad2bbd627d8c940b98b77382b2119d402"> 220</a></span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#ad2bbd627d8c940b98b77382b2119d402">residual_and_jacobian</a> (<span class="keyword">const</span> libMesh::NumericVector<Real>& X,</div><div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  libMesh::NumericVector<Real>* R,</div><div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  libMesh::SparseMatrix<Real>* J,</div><div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  libMesh::NonlinearImplicitSystem& S) {</div><div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  libmesh_assert(<span class="keyword">false</span>); <span class="comment">// implement in the derived class</span></div><div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  }</div><div class="line"><a name="l00226"></a><span class="lineno"> 226</span> </div><div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  <span class="keyword">virtual</span> <span class="keywordtype">bool</span></div><div class="line"><a name="l00239"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base.html#a4eb0ce2595ad5f7b9279825fba621d79"> 239</a></span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a4eb0ce2595ad5f7b9279825fba621d79">sensitivity_assemble</a> (<span class="keyword">const</span> <a class="code" href="class_m_a_s_t_1_1_function_base.html">MAST::FunctionBase</a>& f,</div><div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  libMesh::NumericVector<Real>& sensitivity_rhs) {</div><div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  libmesh_assert(<span class="keyword">false</span>); <span class="comment">// implemented in the derived class</span></div><div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  }</div><div class="line"><a name="l00243"></a><span class="lineno"> 243</span> </div><div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span></div><div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#abbbc4fd5c13c458b2ef6c27636ee7510">calculate_output</a>(<span class="keyword">const</span> libMesh::NumericVector<Real>& X,</div><div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  <a class="code" href="class_m_a_s_t_1_1_output_assembly_elem_operations.html">MAST::OutputAssemblyElemOperations</a>& output);</div><div class="line"><a name="l00250"></a><span class="lineno"> 250</span> </div><div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  </div><div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span></div><div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#acb7019e60e22b2f28799de154a5571da">calculate_output_derivative</a>(<span class="keyword">const</span> libMesh::NumericVector<Real>& X,</div><div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  <a class="code" href="class_m_a_s_t_1_1_output_assembly_elem_operations.html">MAST::OutputAssemblyElemOperations</a>& output,</div><div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  libMesh::NumericVector<Real>& dq_dX);</div><div class="line"><a name="l00259"></a><span class="lineno"> 259</span> </div><div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  </div><div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="keyword">virtual</span> <span class="keywordtype">void</span></div><div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a0c8b29a632eb1b975005798b3862ad60">calculate_output_direct_sensitivity</a>(<span class="keyword">const</span> libMesh::NumericVector<Real>& X,</div><div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="keyword">const</span> libMesh::NumericVector<Real>* dXdp,</div><div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <span class="keyword">const</span> <a class="code" href="class_m_a_s_t_1_1_function_base.html">MAST::FunctionBase</a>& p,</div><div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <a class="code" href="class_m_a_s_t_1_1_output_assembly_elem_operations.html">MAST::OutputAssemblyElemOperations</a>& output);</div><div class="line"><a name="l00275"></a><span class="lineno"> 275</span> </div><div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  </div><div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  <span class="keyword">virtual</span> <a class="code" href="mast__data__types_8h.html#a0fc21c6ff882da286a44d42c85f5378f">Real</a></div><div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#ab6d7c383e893dca4de61657ee7f042cf">calculate_output_adjoint_sensitivity</a>(<span class="keyword">const</span> libMesh::NumericVector<Real>& X,</div><div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  <span class="keyword">const</span> libMesh::NumericVector<Real>& dq_dX,</div><div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  <span class="keyword">const</span> <a class="code" href="class_m_a_s_t_1_1_function_base.html">MAST::FunctionBase</a>& p,</div><div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_elem_operations.html">MAST::AssemblyElemOperations</a>& elem_ops,</div><div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  <a class="code" href="class_m_a_s_t_1_1_output_assembly_elem_operations.html">MAST::OutputAssemblyElemOperations</a>& output,</div><div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  <span class="keyword">const</span> <span class="keywordtype">bool</span> include_partial_sens = <span class="keyword">true</span>);</div><div class="line"><a name="l00289"></a><span class="lineno"> 289</span> </div><div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  </div><div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  std::unique_ptr<libMesh::NumericVector<Real> ></div><div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#ad37944186c61ab97dfc315d53f873e60">build_localized_vector</a>(<span class="keyword">const</span> libMesh::System& sys,</div><div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  <span class="keyword">const</span> libMesh::NumericVector<Real>& global) <span class="keyword">const</span>;</div><div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  </div><div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  </div><div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  <span class="keyword">protected</span>:</div><div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  </div><div class="line"><a name="l00306"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base.html#ad47d566c625e170029729b87c50a83a7"> 306</a></span>  <a class="code" href="class_m_a_s_t_1_1_assembly_elem_operations.html">MAST::AssemblyElemOperations</a>* <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#ad47d566c625e170029729b87c50a83a7">_elem_ops</a>;</div><div class="line"><a name="l00307"></a><span class="lineno"> 307</span> </div><div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  </div><div class="line"><a name="l00312"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base.html#a7c42a8d69afb9d5c63dd9a0d234defae"> 312</a></span>  <a class="code" href="class_m_a_s_t_1_1_physics_discipline_base.html">MAST::PhysicsDisciplineBase</a>* <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a7c42a8d69afb9d5c63dd9a0d234defae">_discipline</a>;</div><div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  </div><div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  </div><div class="line"><a name="l00318"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base.html#a42583481abcb696e0436541b244dc51d"> 318</a></span>  <a class="code" href="class_m_a_s_t_1_1_system_initialization.html">MAST::SystemInitialization</a>* <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a42583481abcb696e0436541b244dc51d">_system</a>;</div><div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  </div><div class="line"><a name="l00323"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base.html#a8f878daffaae4a0eb77db2f3de1d45dc"> 323</a></span>  <a class="code" href="class_m_a_s_t_1_1_mesh_field_function.html">MAST::MeshFieldFunction</a>* <a class="code" href="class_m_a_s_t_1_1_assembly_base.html#a8f878daffaae4a0eb77db2f3de1d45dc">_sol_function</a>;</div><div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  </div><div class="line"><a name="l00329"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base.html#abb647f77c49b15b60250bf1a5081dbe4"> 329</a></span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html">MAST::AssemblyBase::SolverMonitor</a> *<a class="code" href="class_m_a_s_t_1_1_assembly_base.html#abb647f77c49b15b60250bf1a5081dbe4">_solver_monitor</a>;</div><div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  </div><div class="line"><a name="l00336"></a><span class="lineno"><a class="line" href="class_m_a_s_t_1_1_assembly_base.html#aca93947fd87f364b33d7944deb98b99b"> 336</a></span>  <a class="code" href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html">MAST::AssemblyBase::ElemParameterDependence</a> *<a class="code" href="class_m_a_s_t_1_1_assembly_base.html#aca93947fd87f364b33d7944deb98b99b">_param_dependence</a>;</div><div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  };</div><div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  </div><div class="line"><a name="l00339"></a><span class="lineno"> 339</span> }</div><div class="line"><a name="l00340"></a><span class="lineno"> 340</span> </div><div class="line"><a name="l00341"></a><span class="lineno"> 341</span> <span class="preprocessor">#endif // __mast__system_assembly_base_h__</span></div><div class="line"><a name="l00342"></a><span class="lineno"> 342</span> </div><div class="ttc" id="class_m_a_s_t_1_1_function_base_html"><div class="ttname"><a href="class_m_a_s_t_1_1_function_base.html">MAST::FunctionBase</a></div><div class="ttdef"><b>Definition:</b> <a href="function__base_8h_source.html#l00035">function_base.h:35</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_ad47d566c625e170029729b87c50a83a7"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#ad47d566c625e170029729b87c50a83a7">MAST::AssemblyBase::_elem_ops</a></div><div class="ttdeci">MAST::AssemblyElemOperations * _elem_ops</div><div class="ttdoc">provides assembly elem operations for use by this class </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00306">assembly_base.h:306</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a9a4d4c88402ce1d98278c7b1aac25d1b"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a9a4d4c88402ce1d98278c7b1aac25d1b">MAST::AssemblyBase::AssemblyBase</a></div><div class="ttdeci">AssemblyBase()</div><div class="ttdoc">constructor takes a reference to the discipline that provides the boundary conditions, volume loads, properties, etc. </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00039">assembly_base.cpp:39</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor_html_abc8a26ac4d0f61ffd724604ecea8429d"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html#abc8a26ac4d0f61ffd724604ecea8429d">MAST::AssemblyBase::SolverMonitor::clear</a></div><div class="ttdeci">virtual void clear()=0</div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a5eb48a95d52bb9454c9efac225c73ba0"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a5eb48a95d52bb9454c9efac225c73ba0">MAST::AssemblyBase::clear_solver_monitor</a></div><div class="ttdeci">void clear_solver_monitor()</div><div class="ttdoc">clears the monitor object </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00154">assembly_base.cpp:154</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_nonlinear_system_html"><div class="ttname"><a href="class_m_a_s_t_1_1_nonlinear_system.html">MAST::NonlinearSystem</a></div><div class="ttdoc">This class implements a system for solution of nonlinear systems. </div><div class="ttdef"><b>Definition:</b> <a href="nonlinear__system_8h_source.html#l00056">nonlinear_system.h:56</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence_html_af2dbdf12da9e6e2e885106de152fc953"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html#af2dbdf12da9e6e2e885106de152fc953">MAST::AssemblyBase::ElemParameterDependence::override_flag</a></div><div class="ttdeci">bool override_flag</div><div class="ttdoc">if true, assume zero solution sensitivity when elem does not dependent on parameter. </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00097">assembly_base.h:97</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_ad607ffca1c704155f56f503cbfe6350a"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#ad607ffca1c704155f56f503cbfe6350a">MAST::AssemblyBase::clear_elem_operation_object</a></div><div class="ttdeci">virtual void clear_elem_operation_object()</div><div class="ttdoc">clears the association of this object with the assembly element operation object. ...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00199">assembly_base.cpp:199</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a4eb0ce2595ad5f7b9279825fba621d79"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a4eb0ce2595ad5f7b9279825fba621d79">MAST::AssemblyBase::sensitivity_assemble</a></div><div class="ttdeci">virtual bool sensitivity_assemble(const MAST::FunctionBase &f, libMesh::NumericVector< Real > &sensitivity_rhs)</div><div class="ttdoc">Assembly function. </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00239">assembly_base.h:239</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor_html"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html">MAST::AssemblyBase::SolverMonitor</a></div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00067">assembly_base.h:67</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_mesh_field_function_html"><div class="ttname"><a href="class_m_a_s_t_1_1_mesh_field_function.html">MAST::MeshFieldFunction</a></div><div class="ttdoc">This provides a wrapper FieldFunction compatible class that interpolates the solution using libMesh&#39;s...</div><div class="ttdef"><b>Definition:</b> <a href="mesh__field__function_8h_source.html#l00044">mesh_field_function.h:44</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_elem_operations_html"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_elem_operations.html">MAST::AssemblyElemOperations</a></div><div class="ttdef"><b>Definition:</b> <a href="assembly__elem__operation_8h_source.html#l00041">assembly_elem_operation.h:41</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_abb38e8d6b62b5332974755ec4587c1e8"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#abb38e8d6b62b5332974755ec4587c1e8">MAST::AssemblyBase::attach_solution_function</a></div><div class="ttdeci">void attach_solution_function(MAST::MeshFieldFunction &f)</div><div class="ttdoc">tells the assembly object that this function is will need to be initialized before each residual eval...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00234">assembly_base.cpp:234</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_acb7019e60e22b2f28799de154a5571da"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#acb7019e60e22b2f28799de154a5571da">MAST::AssemblyBase::calculate_output_derivative</a></div><div class="ttdeci">virtual void calculate_output_derivative(const libMesh::NumericVector< Real > &X, MAST::OutputAssemblyElemOperations &output, libMesh::NumericVector< Real > &dq_dX)</div><div class="ttdoc">calculates </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00328">assembly_base.cpp:328</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a7a236e900be0ba6dbfe630ebb51e3152"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a7a236e900be0ba6dbfe630ebb51e3152">MAST::AssemblyBase::attach_elem_parameter_dependence_object</a></div><div class="ttdeci">void attach_elem_parameter_dependence_object(MAST::AssemblyBase::ElemParameterDependence &dep)</div><div class="ttdoc">This object, if provided by user, will be used to reduce unnecessary computations in sensitivity anal...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00129">assembly_base.cpp:129</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_ab6d7c383e893dca4de61657ee7f042cf"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#ab6d7c383e893dca4de61657ee7f042cf">MAST::AssemblyBase::calculate_output_adjoint_sensitivity</a></div><div class="ttdeci">virtual Real calculate_output_adjoint_sensitivity(const libMesh::NumericVector< Real > &X, const libMesh::NumericVector< Real > &dq_dX, const MAST::FunctionBase &p, MAST::AssemblyElemOperations &elem_ops, MAST::OutputAssemblyElemOperations &output, const bool include_partial_sens=true)</div><div class="ttdoc">Evaluates the total sensitivity of output wrt p using the adjoint solution provided in dq_dX for a li...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00511">assembly_base.cpp:511</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_aff8ece1161fffa7fc8afc31a8f261455"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#aff8ece1161fffa7fc8afc31a8f261455">MAST::AssemblyBase::set_solver_monitor</a></div><div class="ttdeci">void set_solver_monitor(MAST::AssemblyBase::SolverMonitor &monitor)</div><div class="ttdoc">attaches the solver monitor, which is a user provided routine that is called each time ...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00119">assembly_base.cpp:119</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor_html_ae2eb17875751498a7db02cf5c486ee8b"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html#ae2eb17875751498a7db02cf5c486ee8b">MAST::AssemblyBase::SolverMonitor::SolverMonitor</a></div><div class="ttdeci">SolverMonitor()</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00069">assembly_base.h:69</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_output_assembly_elem_operations_html"><div class="ttname"><a href="class_m_a_s_t_1_1_output_assembly_elem_operations.html">MAST::OutputAssemblyElemOperations</a></div><div class="ttdoc">This provides the base class for definitin of element level contribution of output quantity in an ana...</div><div class="ttdef"><b>Definition:</b> <a href="output__assembly__elem__operations_8h_source.html#l00054">output_assembly_elem_operations.h:54</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence_html_aa1ad24c1c7463b9a48c1885309f01157"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html#aa1ad24c1c7463b9a48c1885309f01157">MAST::AssemblyBase::ElemParameterDependence::ElemParameterDependence</a></div><div class="ttdeci">ElemParameterDependence(bool o_flag)</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00088">assembly_base.h:88</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor_html_a9a81cbb4bd447b7b8bff92a69278cef9"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html#a9a81cbb4bd447b7b8bff92a69278cef9">MAST::AssemblyBase::SolverMonitor::~SolverMonitor</a></div><div class="ttdeci">virtual ~SolverMonitor()</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00070">assembly_base.h:70</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a13f08f11353ef98dda92f3ccacc92902"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a13f08f11353ef98dda92f3ccacc92902">MAST::AssemblyBase::close_matrix</a></div><div class="ttdeci">bool close_matrix</div><div class="ttdoc">flag to control the closing fo the Jacobian after assembly </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00103">assembly_base.h:103</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_system_initialization_html"><div class="ttname"><a href="class_m_a_s_t_1_1_system_initialization.html">MAST::SystemInitialization</a></div><div class="ttdef"><b>Definition:</b> <a href="system__initialization_8h_source.html#l00041">system_initialization.h:41</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_adcc03f1662807d86d866ee3a4e2b60df"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#adcc03f1662807d86d866ee3a4e2b60df">MAST::AssemblyBase::set_elem_operation_object</a></div><div class="ttdeci">virtual void set_elem_operation_object(MAST::AssemblyElemOperations &elem_ops)</div><div class="ttdoc">attaches a element operation to this object, and associated this with the element operation object...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00187">assembly_base.cpp:187</a></div></div>
<div class="ttc" id="mast__data__types_8h_html_a0fc21c6ff882da286a44d42c85f5378f"><div class="ttname"><a href="mast__data__types_8h.html#a0fc21c6ff882da286a44d42c85f5378f">Real</a></div><div class="ttdeci">libMesh::Real Real</div><div class="ttdef"><b>Definition:</b> <a href="mast__data__types_8h_source.html#l00032">mast_data_types.h:32</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a42583481abcb696e0436541b244dc51d"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a42583481abcb696e0436541b244dc51d">MAST::AssemblyBase::_system</a></div><div class="ttdeci">MAST::SystemInitialization * _system</div><div class="ttdoc">System for which this assembly is performed. </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00318">assembly_base.h:318</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor_html_a870f074f8f9784e41fa9fa4b4c490652"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base_1_1_solver_monitor.html#a870f074f8f9784e41fa9fa4b4c490652">MAST::AssemblyBase::SolverMonitor::init</a></div><div class="ttdeci">virtual void init(MAST::AssemblyBase &assembly)=0</div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html">MAST::AssemblyBase</a></div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00051">assembly_base.h:51</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a97d3049ca6034e65f34cacb9cf5dd75b"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a97d3049ca6034e65f34cacb9cf5dd75b">MAST::AssemblyBase::detach_solution_function</a></div><div class="ttdeci">void detach_solution_function()</div><div class="ttdoc">removes the attachment of the solution function </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00246">assembly_base.cpp:246</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a7c42a8d69afb9d5c63dd9a0d234defae"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a7c42a8d69afb9d5c63dd9a0d234defae">MAST::AssemblyBase::_discipline</a></div><div class="ttdeci">MAST::PhysicsDisciplineBase * _discipline</div><div class="ttdoc">PhysicsDisciplineBase object for which this class is assembling. </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00312">assembly_base.h:312</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_physics_discipline_base_html"><div class="ttname"><a href="class_m_a_s_t_1_1_physics_discipline_base.html">MAST::PhysicsDisciplineBase</a></div><div class="ttdef"><b>Definition:</b> <a href="physics__discipline__base_8h_source.html#l00056">physics_discipline_base.h:56</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a9f7f65a2be3dc8f6edb9000020aa8ccf"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a9f7f65a2be3dc8f6edb9000020aa8ccf">MAST::AssemblyBase::clear_discipline_and_system</a></div><div class="ttdeci">virtual void clear_discipline_and_system()</div><div class="ttdoc">clears association with a system to this discipline </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00176">assembly_base.cpp:176</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_abbbc4fd5c13c458b2ef6c27636ee7510"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#abbbc4fd5c13c458b2ef6c27636ee7510">MAST::AssemblyBase::calculate_output</a></div><div class="ttdeci">virtual void calculate_output(const libMesh::NumericVector< Real > &X, MAST::OutputAssemblyElemOperations &output)</div><div class="ttdoc">calculates the value of quantity . </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00254">assembly_base.cpp:254</a></div></div>
<div class="ttc" id="mast__data__types_8h_html"><div class="ttname"><a href="mast__data__types_8h.html">mast_data_types.h</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a0c8b29a632eb1b975005798b3862ad60"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a0c8b29a632eb1b975005798b3862ad60">MAST::AssemblyBase::calculate_output_direct_sensitivity</a></div><div class="ttdeci">virtual void calculate_output_direct_sensitivity(const libMesh::NumericVector< Real > &X, const libMesh::NumericVector< Real > *dXdp, const MAST::FunctionBase &p, MAST::OutputAssemblyElemOperations &output)</div><div class="ttdoc">evaluates the sensitivity of the outputs in the attached discipline with respect to the parametrs in ...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00412">assembly_base.cpp:412</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence_html_a57228147ce0fb41df44e9571cd84f09c"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html#a57228147ce0fb41df44e9571cd84f09c">MAST::AssemblyBase::ElemParameterDependence::~ElemParameterDependence</a></div><div class="ttdeci">virtual ~ElemParameterDependence()</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00089">assembly_base.h:89</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_af8281c5eece58746b64293f8ccea49f3"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#af8281c5eece58746b64293f8ccea49f3">MAST::AssemblyBase::clear_elem_parameter_dependence_object</a></div><div class="ttdeci">void clear_elem_parameter_dependence_object()</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00139">assembly_base.cpp:139</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_ad37944186c61ab97dfc315d53f873e60"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#ad37944186c61ab97dfc315d53f873e60">MAST::AssemblyBase::build_localized_vector</a></div><div class="ttdeci">std::unique_ptr< libMesh::NumericVector< Real > > build_localized_vector(const libMesh::System &sys, const libMesh::NumericVector< Real > &global) const </div><div class="ttdoc">localizes the parallel vector so that the local copy stores all values necessary for calculation of t...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00211">assembly_base.cpp:211</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a652097c4673958f03ff6cca8cf037847"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a652097c4673958f03ff6cca8cf037847">MAST::AssemblyBase::get_solver_monitor</a></div><div class="ttdeci">MAST::AssemblyBase::SolverMonitor * get_solver_monitor()</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00147">assembly_base.cpp:147</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence_html"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base_1_1_elem_parameter_dependence.html">MAST::AssemblyBase::ElemParameterDependence</a></div><div class="ttdoc">Inherited objects from this class can be provided by the user provide assessment of whether or not an...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00086">assembly_base.h:86</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a12fa42f74de999be67da555082a32c5d"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a12fa42f74de999be67da555082a32c5d">MAST::AssemblyBase::system_init</a></div><div class="ttdeci">MAST::SystemInitialization & system_init()</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00110">assembly_base.cpp:110</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_aca93947fd87f364b33d7944deb98b99b"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#aca93947fd87f364b33d7944deb98b99b">MAST::AssemblyBase::_param_dependence</a></div><div class="ttdeci">MAST::AssemblyBase::ElemParameterDependence * _param_dependence</div><div class="ttdoc">If provided by user, this object is used by sensitiivty analysis to check for whether or the current ...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00336">assembly_base.h:336</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a0644e12cd53adc64d9b7e027becc08b5"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a0644e12cd53adc64d9b7e027becc08b5">MAST::AssemblyBase::set_discipline_and_system</a></div><div class="ttdeci">virtual void set_discipline_and_system(MAST::PhysicsDisciplineBase &discipline, MAST::SystemInitialization &system)</div><div class="ttdoc">attaches a system to this discipline </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00162">assembly_base.cpp:162</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a2034db25d6074eef21899ab93c66a833"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a2034db25d6074eef21899ab93c66a833">MAST::AssemblyBase::~AssemblyBase</a></div><div class="ttdeci">virtual ~AssemblyBase()</div><div class="ttdoc">virtual destructor </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00053">assembly_base.cpp:53</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a0b4114f497996001f1e54f452a926786"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a0b4114f497996001f1e54f452a926786">MAST::AssemblyBase::get_elem_ops</a></div><div class="ttdeci">MAST::AssemblyElemOperations & get_elem_ops()</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00101">assembly_base.cpp:101</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_ad2bbd627d8c940b98b77382b2119d402"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#ad2bbd627d8c940b98b77382b2119d402">MAST::AssemblyBase::residual_and_jacobian</a></div><div class="ttdeci">virtual void residual_and_jacobian(const libMesh::NumericVector< Real > &X, libMesh::NumericVector< Real > *R, libMesh::SparseMatrix< Real > *J, libMesh::NonlinearImplicitSystem &S)</div><div class="ttdoc">function that assembles the matrices and vectors quantities for nonlinear solution ...</div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00220">assembly_base.h:220</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_abb647f77c49b15b60250bf1a5081dbe4"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#abb647f77c49b15b60250bf1a5081dbe4">MAST::AssemblyBase::_solver_monitor</a></div><div class="ttdeci">MAST::AssemblyBase::SolverMonitor * _solver_monitor</div><div class="ttdoc">User provided solver monitor is attached to the linear nonlinear solvers, if provided. </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00329">assembly_base.h:329</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_abdff8292b4929a3aa7276c639a8d05e3"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#abdff8292b4929a3aa7276c639a8d05e3">MAST::AssemblyBase::system</a></div><div class="ttdeci">const MAST::NonlinearSystem & system() const </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00083">assembly_base.cpp:83</a></div></div>
<div class="ttc" id="namespace_m_a_s_t_html"><div class="ttname"><a href="namespace_m_a_s_t.html">MAST</a></div><div class="ttdef"><b>Definition:</b> <a href="flutter__root__base_8h_source.html#l00027">flutter_root_base.h:27</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a8f878daffaae4a0eb77db2f3de1d45dc"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a8f878daffaae4a0eb77db2f3de1d45dc">MAST::AssemblyBase::_sol_function</a></div><div class="ttdeci">MAST::MeshFieldFunction * _sol_function</div><div class="ttdoc">system solution that will be initialized before each solution </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8h_source.html#l00323">assembly_base.h:323</a></div></div>
<div class="ttc" id="class_m_a_s_t_1_1_assembly_base_html_a447c284ed86a61935a8498a5fee23462"><div class="ttname"><a href="class_m_a_s_t_1_1_assembly_base.html#a447c284ed86a61935a8498a5fee23462">MAST::AssemblyBase::discipline</a></div><div class="ttdeci">const MAST::PhysicsDisciplineBase & discipline() const </div><div class="ttdef"><b>Definition:</b> <a href="assembly__base_8cpp_source.html#l00062">assembly_base.cpp:62</a></div></div>
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